水坝运行对山下水库中苍鹭的食物组成、采食区内种群数量及采食区域变化的影响

与水库水位低、繁殖群已经形成的2000-2001年相比, 苍鹭(Ardea cinerea) 的种群数量在水位正常、尚未繁殖的1990-1991年相对较低。该种鸟类在水库的3个地点取食。1990-1991年的8 月或9 月, 其数量达到最高值, 并有较高比例的个体出现在水库深水区的平坦的岸边。2000-2001 年的数量高峰在6 月份, 有大量的觅食个体出现在回水区, 在那里形成了新的生境(水塘、浅水区和沙洲)。苍鹭迁离或飞往繁殖地的活动在早晨或中午之前强于中午或下午。在其食物中共鉴别出17种鱼类, 其中数量最多的是圆鳍雅罗鱼和拟鲤。在苍鹭食物中, 游动性鱼类比例较高(2001年占32%, 2003年占25%), 表明它是在河流和水库之间的生态交错区取食的。所捕食鱼类的全长为4 cm到33 cm, 生物量在2-406 g之间。在2001 年和2003 年苍鹭食物中鱼类的全长未见明显差异。     

人为干扰对黑腹滨鹬觅食行为的影响

2003年11月至2004年3月,采用目标动物取样法和人为干扰实验法,于浙江省乐清湾滩涂进行人类活动对黑腹滨鹬(Calidrisalpina)觅食行为影响的研究。取样观察结果表明,在每天沿海堤可观察黑腹滨鹬持续觅食的1h里,96.6%的黑腹滨鹬在35m或更小的距离上通过奔跑或惊飞对人类的活动作出反应;黑腹滨鹬花费90%(人类较多的盐盆滩涂为85%,较少的乐成滩涂为94%)的时间觅食,10%的时间用于避免人类的干扰;人数、人类活动类型对觅食时间具有显著影响,人数、人离黑腹滨鹬的距离、人类活动类型对黑腹滨鹬移动的距离、移动的次数以及黑腹滨鹬对人类靠近的反应均具有显著效应。人为干扰最小接近距离实验结果表明,黑腹滨鹬对人类反应的距离在3～30m;干扰人数为1人时的最小接近距离显著大于2人;人类行走和奔跑的两种活动类型对黑腹滨鹬的最小接近距离没有显著影响。本研究验证了滨鸟觅食区内的人为活动严重影响黑腹滨鹬觅食行为的假设。     

Spatial variation in species diversity and composition of flea assemblages in small mammalian hosts: geographical distance or faunal similarity?

Aim Spatial variation in the diversity of fleas parasitic on small mammals was examined to answer three questions. (1) Is the diversity of flea assemblages repeatable among populations of the same host species? (2) Does similarity in the composition of flea assemblages among populations of the same host species decay with geographical distance, with decreasing similarity in the composition of local host faunas, or with both? (3) Does the diversity of flea assemblages correlate with climatic variables? Location The study used previously published data on 69 species of small mammals and their fleas from 24 different regions of the Holarctic. Methods The diversity of flea assemblages was measured as both species richness and the average taxonomic distinctness of their component species. Similarity between flea assemblages was measured using both the Jaccard and Morisita–Horn indices, whereas similarity in the composition of host faunas between regions (host ‘faunal’ distance) was quantified using the Jaccard index. Where appropriate, a correction was made for the potentially confounding influence of phylogeny using the independent contrasts method. Results Flea species richness varied less within than among host species, and is thus a repeatable host species character; the same was not true of the taxonomic distinctness of flea assemblages. In almost all host species found in at least five regions, similarity in flea assemblages decreased with increases in either or both geographical and faunal distance. In most host species, the diversity of flea assemblages correlated with one or more climatic variable, in particular mean winter temperature. Main conclusions Spatial variation in flea diversity among populations of the same mammal species is constrained by the fact that it appears to be a species character, but is also driven by local climatic conditions. The results highlight how ecological processes interact with co‐evolutionary history to determine local parasite biodiversity.     

北京地区黑鹳越冬期的取食行为

2004年12月至2005年3月在北京十渡地区的二渡和涞水县野三坡两地采用目标取样法对越冬期黑鹳(Ciconia nigra)的取食行为进行了观察。每星期观察一次,累计观察246 h。黑鹳觅食处水深5~40 cm左右,以鱼类和螺类为食,其中鱼类占90%以上;平均每小时进食20次左右,黑鹳在两个研究地点取食的食物没有差别(P=0.439>0.05)。黑鹳取食长度小于4 cm的鱼类最多,占取食总次数的65.0%。成体和亚成体对不同大小鱼类的取食比例无差异(小于4 cm的鱼类,P=0.513>0.05;5~8 cm,P=0.979>0.05;≥9 cm,P=0.657>0.05)。在成体与亚成体对不同体型鱼类的搜寻时间中,成体搜寻较小食物的时间短于亚成体(P=0.008<0.05)。对食物的处理时间随着鱼类大小递增而延长,亚成体在处理较小食物上花费的时间相对较长(小于4 cm的鱼P=0.002<0.05;5~8cm的鱼P=0.001<0.05),表明亚成体的取食经验不足。保护越冬期黑鹳的最佳对策是减少对其取食活动和取食地的人为干扰。     

Kolmogorov complexity of epithelial pattern formation: The role of regulatory network configuration

The tissues of multicellular organisms are made of differentiated cells arranged in organized patterns. This organization emerges during development from the coupling of dynamic intra- and intercellular regulatory networks. This work applies the methods of information theory to understand how regulatory network structure both within and between cells relates to the complexity of spatial patterns that emerge as a consequence of network operation. A computational study was performed in which undifferentiated cells were arranged in a two dimensional lattice, with gene expression in each cell regulated by identical intracellular randomly generated Boolean networks. Cell–cell contact signalling between embryonic cells is modeled as coupling among intracellular networks so that gene expression in one cell can influence the expression of genes in adjacent cells. In this system, the initially identical cells differentiate and form patterns of different cell types. The complexity of network structure, temporal dynamics and spatial organization is quantified through the Kolmogorov-based measures of normalized compression distance and set complexity. Results over sets of random networks that operate in the ordered, critical and chaotic domains demonstrate that: (1) ordered and critical networks tend to create the most information-rich patterns; (2) signalling configurations in which cell-to-cell communication is non-directional mostly produce simple patterns irrespective of the internal network domain; and (3) directional signalling configurations, similar to those that function in planar cell polarity, produce the most complex patterns, but only when the intracellular networks function in non-chaotic domains.     

莫莫格自然保护区白鹤秋季迁徙停歇期觅食生境选择

2008年秋季(10月8日—20日)及2009年秋季(9月20日—10月16日),通过样方法对觅食生境11个生态因子进行调查,利用卡方检验、资源选择指数和资源选择函数在莫莫格保护区对秋季迁徙停歇期白鹤觅食生境选择进行研究。结果表明,白鹤对距人为干扰源距离、植被密度、盖度、高度、植物性食物密度以及水深均具有选择性,但对宏观尺度干扰因子的选择性较低。其偏好觅食生境的特点为:距一级路>5000m,>二级路1500m以上,>三级路1000m以上,>居民点1000m以上,农田>1000m;植被密度20~50株/m2,盖度<10%,高度<20cm,扁杆藨草密度1~50株/m2,藨草密度1~10株/m2,水深40~60cm。白鹤秋季觅食生境资源选择函数为Logistic(P)=0.663+0.565×与一级道路距离+0.042×与二级道路距离+0.519×与三级道路距离+0.353×与居民点距离+0.169×与农田距离–0.455×植被密度–0.618×植被盖度–0.548×植被高度–0.158×扁杆藨草密度–0.404×藨草密度+0.920×水深,T(x)=eLogistic(p)/[1+eLogistic(p)],模型正确预测率为82.9%。     

Comparison of dynamics of wildtype and V94M human UDP-galactose 4-epimerase—A computational perspective on severe epimerase-deficiency galactosemia

UDP-galactose 4′-epimerase (GALE) catalyzes the interconversion of UDP-galactose and UDP-glucose, an important step in galactose catabolism. Type III galactosemia, an inherited metabolic disease, is associated with mutations in human GALE. The V94M mutation has been associated with a very severe form of type III galactosemia. While a variety of structural and biochemical studies have been reported that elucidate differences between the wildtype and this mutant form of human GALE, little is known about the dynamics of the protein and how mutations influence structure and function. We performed molecular dynamics simulations on the wildtype and V94M enzyme in different states of substrate and cofactor binding. In the mutant, the average distance between the substrate and both a key catalytic residue (Tyr157) and the enzyme-bound NAD⁺ cofactor and the active site dynamics are altered making substrate binding slightly less stable. However, overall stability or dynamics of the protein is not altered. This is consistent with experimental findings that the impact is largely on the turnover number (k_cat), with less substantial effects on K_m. Active site fluctuations were found to be correlated in enzyme with substrate bound to just one of the subunits in the homodimer suggesting inter-subunit communication. Greater active site loop mobility in human GALE compared to the equivalent loop in Escherichia coli GALE explains why the former can catalyze the interconversion of UDP-N-acetylgalactosamine and UDP-N-acetylglucosamine while the bacterial enzyme cannot. This work illuminates molecular mechanisms of disease and may inform the design of small molecule therapies for type III galactosemia.     

Contrasting patterns of genetic differentiation in Macaronesian lineages of Ilex (Aquifoliaceae)

Islands offer an interesting framework in which to study the effect of geographical isolation on population genetic differentiation. For plant species with high dispersal abilities, however, oceanic barriers may not represent a factor promoting strong population structure. In this work, we analysed seven nuclear microsatellite loci in Ilex (Aquifoliaceae), a bird‐dispersed plant group, to infer patterns of genetic differentiation among Macaronesian taxa: I. canariensis, I. perado ssp. lopezlilloi, I. perado ssp. platyphylla (Canary Islands) and I. perado ssp. azorica (Azores). In agreement with current taxonomic classification, our results revealed a high genetic differentiation between Ilex lineages (I. canariensis and the I. perado complex), and also supported previous hypotheses that these are the result of independent dispersal events to the islands. In contrast, genetic differentiation between I. perado ssp. azorica and the two subspecies from the Canaries was high, suggesting that taxonomic revision may be necessary. Levels of genetic variation at microsatellite loci in ssp. azorica were, in addition, the lowest reported among Macaronesian bird‐dispersed taxa. Lastly, low genetic differentiation was observed between subspecies occurring on the same island (sspp. platyphylla and lopezlilloi). In summary, our results revealed contrasting patterns between Macaronesian Ilex lineages: I. canariensis displayed moderate population structure across islands, whereas the I. perado complex showed strong differentiation among populations sampled on different islands. Thus, the Macaronesian Ilex taxa show that long‐distance dispersal syndromes (ornithochory) do not always ensure genetic connectivity across large areas in island systems. Plant groups that successfully colonized the islands on multiple occasions may have found barriers to gene flow within certain lineages. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 173 , 258–268.     

EXAMINING THE FULL EFFECTS OF LANDSCAPE HETEROGENEITY ON SPATIAL GENETIC VARIATION: A MULTIPLE MATRIX REGRESSION APPROACH FOR QUANTIFYING GEOGRAPHIC AND ECOLOGICAL ISOLATION

Understanding the effects of landscape heterogeneity on spatial genetic variation is a primary goal of landscape genetics. Ecological and geographic variables can contribute to genetic structure through geographic isolation, in which geographic barriers and distances restrict gene flow, and ecological isolation, in which gene flow among populations inhabiting different environments is limited by selection against dispersers moving between them. Although methods have been developed to study geographic isolation in detail, ecological isolation has received much less attention, partly because disentangling the effects of these mechanisms is inherently difficult. Here, I describe a novel approach for quantifying the effects of geographic and ecological isolation using multiple matrix regression with randomization. I explored the parameter space over which this method is effective using a series of individual‐based simulations and found that it accurately describes the effects of geographic and ecological isolation over a wide range of conditions. I also applied this method to a set of real‐world datasets to show that ecological isolation is an often overlooked but important contributor to patterns of spatial genetic variation and to demonstrate how this analysis can provide new insights into how landscapes contribute to the evolution of genetic variation in nature.